PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016509335.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 501aa    MW: 55537.8 Da    PI: 9.6832
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016509335.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000126585323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C+ C+k F r  nL+ H r H
  XP_016509335.1 65 CEVCNKGFQREQNLQLHRRGH 85
                    *******************88 PP

2zf-C2H214.69.3e-05140162123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H +t+
  XP_016509335.1 140 FKCEKCSKKYAVQSDWKAHTKTC 162
                     89*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.5E-66285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.18E-76285No hitNo description
SMARTSM003550.0256385IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.976385IPR007087Zinc finger, C2H2
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SMARTSM00355240105135IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.5E-5128161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.18E-7135160No hitNo description
SMARTSM0035588140160IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MNIQQEVLLQ KQQYSLAPSS SMVQTQAQAA PTKKRRNQPG TTPYPDAEVI ALSPKTLMAT  60
NRFLCEVCNK GFQREQNLQL HRRGHNLPWK LKQKNTKEVV KRKVYLCPEI TCVHHETSRA  120
LGDLTGIKKH YFRKHGEKKF KCEKCSKKYA VQSDWKAHTK TCGTREYKCD CGTIFSRRDS  180
FITHRAFCDA LAQETARNPV PNFSTIGSHL YGSNSNINLG NFSKMQNSTI SDQKLSLGNT  240
NHNLIGTSNI GSSTSNSFFF QESNQDYANI KPIHSLMQLP NFHNNNMFNL NFFQNNDGNI  300
NLPSGILGDQ NISCSIPSLY GSQVQNHNLN NTTSSVAPMS ATALLQKAAQ IGSTTSNIST  360
TASLLKAFGN STNGGNSSSS GTKSDHQAVN FGDIFSDHSE NHLPEINGEA GNFGPTGDIV  420
NVFNAYGHDQ NDYGGGYNKA TKLNFEQQQH QLPLQKKQLT RDFLGVGEIV RRSMSGGFSS  480
QREQQQQQQS KQGFASAGNF Q
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603158.10.0PREDICTED: zinc finger protein JACKDAW-like
RefseqXP_016509335.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like
SwissprotQ8GYC11e-124IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLM1CVT30.0M1CVT3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000758370.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-102indeterminate(ID)-domain 4